Research Lab

Research projects and smaller learning notes.

PathOS is the main research project here. Smaller experiments and workshop notes stay separate from the flagship project list.

Lab Projects

Research and experimental builds with enough substance for a full Details page.

AI & Computer VisionExperimental

PathOS / Prostate Lesion Detection

Research pipeline for prostate whole-slide images using OpenSlide preprocessing, HistoEncoder/Virchow2 embeddings, artifact gating, ABMIL/TransMIL, QWK evaluation, and attention heatmaps.

Python 3.12PyTorchCUDAOpenSlide+11
2025-2026Research and ML engineering work on a prostate WSI pipeline. The repository is private; the portfolio shows architecture, experiment artifacts, and model-evaluation evidence. This is not a clinical product.
Details
LLM & Agentic SystemsExperimental

Agno Agentic Programming Demos

Learning lab with runnable examples for Agno agents, Gemini tools, Pydantic output, LanceDB RAG, and SQLite session memory.

PythonAgnoGoogle GeminiPydantic+7
2025Personal learning repository for Agentic Programming Fundamentals, built to practice Agno agents, Gemini models, tool calls, structured output, RAG, and memory.
DetailsGitHub
AI & Computer VisionExperimental

Pneumonia Detection Lab

Educational chest X-ray lab comparing handcrafted-feature logistic regression and CNN models for Normal vs Pneumonia prediction.

PythonJupyter NotebookTensorFlow/Kerasscikit-learn+9
2024-2025Academic team contributor with Chawki Belhadid, presenting the public repository as educational medical-imaging work rather than a diagnostic product.
DetailsGitHub
AI & Computer VisionExperimental

Automated Coin Counting

Academic CV experiment that segments coin images, validates circular regions, groups coin sizes, and compares detected counts with labels.

PythonTkinterPillowNumPy+6
2024-2025Academic computer vision lab with Chawki Belhadid, focused on classical image processing, count validation, and a Tkinter desktop interface.
DetailsGitHub

Research & Workshop Notes

Smaller learning, teaching, and workshop artifacts kept separate from project cards.

Research2025-2026

PathOS / Prostate WSI Research

Experimental prostate WSI pipeline using OpenSlide preprocessing, HistoEncoder/Virchow2 embeddings, artifact gating, ABMIL/TransMIL, QWK evaluation, and attention heatmaps. Private repo; no clinical product claim.

OpenSlidePyTorchHistoEncoderVirchow2ABMILTransMILQWK
Project details
Workshop2024

AI Bootcamp

Workshop notes and learning material used for AI teaching and community sessions.

AI EducationPythonCommunity
GitHub